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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs12579298 chr12:112394022 G/T 6.38E-6 191 12.57 14.98 5.17 KM Plot
LIHC rs12582302 chr12:112345634 A/G 6.38E-6 192 12.57 14.98 4.03 KM Plot
LIHC rs12582376 chr12:112420128 C/G 0.000111 191 13.03 14.85 6.7 KM Plot
LIHC rs12620833 chr2:86472870 T/C 0.000296 189 16.07 11.18 13.98 KM Plot
LIHC rs12629957 chr3:129135631 G/T 9.84E-6 191 14.1 12.88 1.78 KM Plot
LIHC rs12632470 chr3:129134893 T/C 9.84E-6 191 14.1 12.88 1.78 KM Plot
LIHC rs12643828 chr4:44627266 G/C 1.34E-5 191 15.43 13.53 3.4 KM Plot
LIHC rs12645919 chr4:44795787 G/A 0.000191 186 14.45 13.7 6.57 KM Plot
LIHC rs12650035 chr4:44627353 C/A 1.34E-5 191 15.43 13.53 3.4 KM Plot
LIHC rs12731035 chr1:224592880 T/A 0.000457 190 13.15 13.87 2.17 KM Plot
LIHC rs12731630 chr1:224650947 A/G 5.12E-5 192 13.53 13.87 5.25 KM Plot
LIHC rs12738799 chr1:224610017 G/C 0.000103 190 13.55 13.37 5.25 KM Plot
LIHC rs12739486 chr1:224605825 A/T 0.000103 190 13.55 13.37 5.25 KM Plot
LIHC rs12742989 chr1:224629702 A/G 0.000109 192 13.58 13.37 5.25 KM Plot
LIHC rs12743200 chr1:224644060 G/A 0.000112 191 13.57 13.37 5.25 KM Plot